Version 3 Proteins from 2002-10-01
A bioinformatics resource for apoptosis researchers
Structures

Proteins Families with 'Apoptotic' Domains



A-1AIF / PCD-8Ankyrin
APAF-1ARCASC-1
Baculoviral IAPBAG-1BAG-5
BAKBAP29/BAP31BAX
Bcl-10Bcl-2Bcl-w
Bcl-XBHP1BHP2
BIDBOKBoo/Diva
BRUCEc-FLIPCARD-12
CARD-14CARD-8CARD4
CARDIAK/RIP-2-KinaseCaspase Activated DNA-aseCaspase-1
Caspase-14Caspase-2Caspase-3, -7 Group
Caspase-6Caspase-8 GroupCaspase-9
CaspyCED-3CED-4
CED-9cIAP-1/cIAP-2CIDE-A/B
DAP-KinaseDeath Receptor 6Death Receptor-5, TNFSF 10a
DEDDDREP-1DRONC
Drosophila CADDrosophila IAPE1
E1B 19kectodysplasin-1FADD
FASL-ReceptorFat Specific Protein-27IAP-1
ICADIRAKKIAP
mammalian Bag-3Mammalian IAPMCL-1
mda-5MeprinMIL-1
MyD88NAIPNF-kappaB
NGF-ReceptorParacaspasePEA-15
PELLEPIDDPlant TRAF
RAIDDRIP-KinaseRPS2
SODDSurvivin / IAP-4TNF-R1
TRADDTRAF-1 & -2TRAF-3 & -5
TRAF-4TRAF-6Type 1 C. elegans Caspase
Type 1 Drosophila CaspaseType 2 C. elegans CaspaseType 2 Drosophila Caspase
Type 3 Drosophila CaspaseType 4 Drosophila CaspaseType-1 C. elegans Traf
Type-1 Drosophila TRAFv-FLIP
viral CIDEViral E10XIAP
Yeast Bag Protein

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A-1

SWISS-PROT: RETARDS APOPTOSIS INDUCED BY IL-3 DEPRIVATION. MAY FUNCTION IN THE RESPONSE OF HEMOPOIETIC CELLS TO EXTERNAL SIGNALS AND IN MAINTAINING ENDOTHELIAL SURVIVAL DURING INFECTION.
Detail of this Protein Archetype
Apoptotic Domains
Bcl-2 Domain
Pfam Domains
Bcl-2
0 References2 Founders

AIF / PCD-8

AIF, apoptosis-inducing factor, provides a caspase-independent link between mitochondria and apoptotic response in the nucleus. When apoptosis is induced, AIF if released from the mitochondria to the cytosol and the nucleus. Microinjected AIF is sufficient to induce apoptosis (independently of caspases).
Detail of this Protein Archetype
Apoptotic Domains
AIF/PCD-8 C-term Motif
Pfam Domains
pyr_redox
0 References2 Founders

Ankyrin

SWISS-PROT: ATTACH INTEGRAL MEMBRANE PROTEINS TO CYTOSKELETAL ELEMENTS; BIND TO THE ERYTHROCYTE MEMBRANE PROTEIN BAND 4.2, TO NA-K ATPASE, TO THE LYMPHOCYTE MEMBRANE PROTEIN GP85, AND TO THE CYTOSKELETAL PROTEINS FODRIN, TUBULIN, VIMENTIN AND DESMIN. ERYTHROCYTE ANKYRINS ALSO LINK SPECTRIN (BETA CHAIN) TO THE CYTOPLASMIC DOMAIN OF THE ERYTHROCYTES ANION EXCHANGE PROTEIN; THEY RETAIN MOST OR ALL OF THESE BINDING NGE PROTEIN; THEY RETAIN MOST OR ALL OF THESE BINDING FUNCTIONS.
Detail of this Protein Archetype
Apoptotic Domains
Death Domain
Pfam Domains
ank
death
ZU5
0 References3 Founders

APAF-1

Links release of cytochome-c from the mitochondria to the activation of caspases (caspase-9 then caspase-3) which commits a cell to apoptosis. APAF-1 oligomerizes to form the "apoptosome" along with cytochome-c and caspase-9.
Detail of this Protein Archetype
Apoptotic Domains
CAspase Recruitment Domain
NB-ARC Domain
Pfam Domains
CARD
NB-ARC
WD40
0 References4 Founders

ARC

Inhibitor of apoptosis with CARD and Glu-,Pro-rich region. Interacts with Caspase-2,-8 and CED-3, but not with Caspase-1, -3, -9. Selective expression in skeletal muscle and cardiac tissue. [PNAS-USA 95, 5156-5160 (1998)]
Detail of this Protein Archetype
Apoptotic Domains
CAspase Recruitment Domain
1 References1 Founders

ASC-1

Genes with homology to mammalian apoptosis regulators identified in zebrafish. (Cell Death Differ. 7, 509-510 (2000))
Detail of this Protein Archetype
Apoptotic Domains
CAspase Recruitment Domain
Pfam Domains
PAAD_DAPIN
1 References3 Founders

Baculoviral IAP

Baculoviral Inhibitor of Apoptosis rescue cells from apoptosis so that viral replication occurs successfully.
Detail of this Protein Archetype
Apoptotic Domains
BIR Domain
Pfam Domains
BIR
0 References2 Founders

BAG-1

BAG-1="Bcl-2 Associated Athanogene-1". SWISS-PROT: BCL-2 BINDING PROTEIN WITH ANTI-APOPTOTIC ACTIVITY. MARKEDLY INCREASES THE ANTI-CELL DEATH FUNCTION OF BCL-2 INDUCED BY VARIOUS STIMULI. INTERACTS WITH ACTIVATED GLUCOCORTICOID RECEPTOR, PROGESTERONE RECEPTOR, AND WITH OTHER MEMBERS OF THE NUCLEAR HORMONE RECEPTOR FAMILY.
Detail of this Protein Archetype
Apoptotic Domains
BAG Domain
Pfam Domains
BAG
ubiquitin
0 References2 Founders

BAG-5

 
Detail of this Protein Archetype
Apoptotic Domains
BAG Domain
Pfam Domains
BAG
0 References2 Founders

BAK

SWISS-PROT: IN THE PRESENCE OF AN APPROPRIATE STIMULUS, ACCELERATES PROGRAMED CELL DEATH BY BINDING TO, AND ANTAGONIZING THE A REPRESSOR BCL-2 OR ITS ADENOVIRUS HOMOLOG E1B 19K PROTEIN.
Detail of this Protein Archetype
Apoptotic Domains
Bcl-2 Domain
Pfam Domains
Bcl-2
0 References2 Founders

BAP29/BAP31

Associated with IgD and (weakly) IgM immunoglobulins on the cell surface of mature B cells. Also associated with Bcl-2/Bcl-XL- and procaspase-8 proteins in the endoplasmic reticulum. Believed to bridge an apoptosis-initiating caspase, like procaspase-8, with the anti-apoptotic regulator Bcl-2 or Bcl-XL.
Detail of this Protein Archetype
Apoptotic Domains
Death Effector Domain
0 References2 Founders

BAX

SWISS-PROT: ACCELERATES PROGRAMED CELL DEATH BY BINDING TO, AND ANTAGONIZING THE APOPTOSIS REPRESSOR BCL-2 OR ITS ADENOVIRUS HOMOLOG E1B 19K PROTEIN. INDUCES THE RELEASE OF CYTOCHROME C, ACTIVATION OF CASPASE-3, AND THEREBY APOPTOSIS.
Detail of this Protein Archetype
Apoptotic Domains
Bcl-2 Domain
Pfam Domains
Bcl-2
0 References2 Founders

Bcl-10

Bcl-10 (CLAP/CIPER/RCD-1), a caspase recruitment domain-containing protein in the tumor necrosis factor receptor pathway, regulates NF-kappaB activation and apoptosis.
Detail of this Protein Archetype
Apoptotic Domains
CAspase Recruitment Domain
Pfam Domains
CARD
0 References2 Founders

Bcl-2

SWISS-PROT:PROLONGS THE SURVIVAL OF HEMATOPOIETIC CELLS IN THE ABSENCE OF REQUIRED GROWTH FACTORS AND ALSO IN THE PRESENCE OF VARIOUS STIMULI INDUCING CELLULAR DEATH. BCL2 BLOCKS APOPTOSIS BECAUSE IT INTERFERES WITH THE ACTIVATION OF CASPASES BY PREVENTING THE RELEASE OF CYTOCHROME C. MIGHT FUNCTION IN AN ANTIOXIDANT PATHWAY TO PREVENT APOPTOSIS AT SITES OF FREE RADICAL GENERATION SUCH AS MITOCHONDRIA
Detail of this Protein Archetype
Apoptotic Domains
Bcl-2 Domain
Pfam Domains
Bcl-2
BH4
0 References4 Founders

Bcl-w

SWISS-PROT: PROMOTES CELL SURVIVAL.
Detail of this Protein Archetype
Apoptotic Domains
Bcl-2 Domain
Pfam Domains
Bcl-2
BH4
0 References2 Founders

Bcl-X

SWISS-PROT: DOMINANT REGULATOR OF APOPTOTIC CELL DEATH. THE LONG FORM DISPLAYS CELL DEATH REPRESSOR ACTIVITY, WHEREAS THE SHORT ISOFORM PROMOTES APOPTOSIS.
Detail of this Protein Archetype
Apoptotic Domains
Bcl-2 Domain
Pfam Domains
Bcl-2
BH4
0 References2 Founders

BHP1

Bcl-2 homologs from sponge
Detail of this Protein Archetype
Apoptotic Domains
Bcl-2 Domain
Pfam Domains
Bcl-2
0 References2 Founders

BHP2

Bcl-2 homologs from sponge
Detail of this Protein Archetype
Apoptotic Domains
Bcl-2 Domain
Pfam Domains
Bcl-2
0 References1 Founders
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Script Last modified $Date: 2002/12/20 04:06:18 $